This paper describes a two-stage isolated word search recognition system that uses a Hidden Markov Model (HMM) recognizer in the first stage and a discriminant analysis system in the second stage. During recognition, when the first-stage recognizer is unable to clearly differentiate between acoustically similar words such as "go" and "no" the second-stage discriminator is used. The second-stage system focuses on those parts of the unknown token which are most effective at discriminating the confused words. The system was tested on a 35 word, 10,710 token stress speech isolated word data base created at Lincoln Laboratory. Adding the second-stage discriminating system produced the best results to date on this data base, reducing the overall error rate by more than a factor of two.